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EDIT: I've found the solution to this problem. I changed all the [latex] bbcodes to [mhchem], and encouraged my member to take care of using spaces, operator (+), and (-) so the operators aren't changed into ions
I've found the answer also, according to this site, installing mhchem means switching totally to mhchem, so I disabled MathJax and used only mhchem instead.
Thank you and sorry for my mistakes