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MySQL server has gone away [2006] - Extension Manager Plus

MySQL server has gone away [2006]

by dimassamid » Tue Jun 18, 2024 10:13 pm

Hello,

I have an error when checking the versions of all extensions. I have 140 extensions on the forum. Checking new versions takes some time, but the database does not crash if I do it using the default phpBB tool.

General error.png

Code: Select all

SQL ERROR [ mysqli ]

MySQL server has gone away [2006]

SQL

SELECT * FROM phpbb_config_text WHERE config_name = 'extmgrplus_list_version_check'

BACKTRACE

FILE: (not given by php)
LINE: (not given by php)
CALL: msg_handler()

FILE: [ROOT]/phpbb/db/driver/driver.php
LINE: 1031
CALL: trigger_error()

FILE: [ROOT]/phpbb/db/driver/mysqli.php
LINE: 211
CALL: phpbb\db\driver\driver->sql_error()

FILE: [ROOT]/phpbb/db/driver/factory.php
LINE: 353
CALL: phpbb\db\driver\mysqli->sql_query()

FILE: [ROOT]/phpbb/config/db_text.php
LINE: 133
CALL: phpbb\db\driver\factory->sql_query()

FILE: [ROOT]/phpbb/config/db_text.php
LINE: 68
CALL: phpbb\config\db_text->get_array()

FILE: [ROOT]/ext/lukewcs/extmgrplus/core/ext_mgr_plus_common.php
LINE: 106
CALL: phpbb\config\db_text->get()

FILE: [ROOT]/ext/lukewcs/extmgrplus/core/ext_mgr_plus.php
LINE: 835
CALL: lukewcs\extmgrplus\core\ext_mgr_plus_common->config_text_set()

FILE: [ROOT]/ext/lukewcs/extmgrplus/core/ext_mgr_plus.php
LINE: 194
CALL: lukewcs\extmgrplus\core\ext_mgr_plus->versioncheck_save()

FILE: [ROOT]/ext/lukewcs/extmgrplus/event/listener.php
LINE: 49
CALL: lukewcs\extmgrplus\core\ext_mgr_plus->ext_manager_after()

FILE: (not given by php)
LINE: (not given by php)
CALL: lukewcs\extmgrplus\event\listener->ext_manager_after()

FILE: [ROOT]/vendor/symfony/event-dispatcher/EventDispatcher.php
LINE: 214
CALL: call_user_func()

FILE: [ROOT]/vendor/symfony/event-dispatcher/EventDispatcher.php
LINE: 44
CALL: Symfony\Component\EventDispatcher\EventDispatcher->doDispatch()

FILE: [ROOT]/phpbb/event/dispatcher.php
LINE: 62
CALL: Symfony\Component\EventDispatcher\EventDispatcher->dispatch()

FILE: [ROOT]/phpbb/event/dispatcher.php
LINE: 46
CALL: phpbb\event\dispatcher->dispatch()

FILE: [ROOT]/includes/acp/acp_extensions.php
LINE: 387
CALL: phpbb\event\dispatcher->trigger_event()

FILE: [ROOT]/includes/functions_module.php
LINE: 676
CALL: acp_extensions->main()

FILE: [ROOT]/adm/index.php
LINE: 81
CALL: p_master->load_active()
dimassamid
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Re: MySQL server has gone away [2006]

by LukeWCS » Wed Jun 19, 2024 2:04 pm

Hello

EMP carries out the version check with exactly the same function as phpBB itself. The difference is that after the version check, EMP reads the version data from the cache and writes it into the database. And it seems that there is a problem with this step in your case.

However, I have never seen such an error message with EMP. Before writing, EMP first reads the extmgrplus_list_version_check field from the DB and at this point the MySQL server says goodbye to you, for whatever reason. I use the config_text->get function from phpBB, which executes this SQL query that can be seen in your error message. If this simple query results in such an error message, the problem is not with EMP, but somewhere else. The SQL query is a simple read query and the amount of data to be transferred is also very small, even with 140 extensions.

Which versions do you have of

EMP
PHP
phpBB

?
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Re: MySQL server has gone away [2006]

by dimassamid » Wed Jun 19, 2024 5:58 pm

Thank you for your reply!

EMP 2.0.1 (from GitHub)
I was previously using version 1.1.2 which had the same problem.
PHP 8.3.2
phpBB 3.3.12
db server: MySQL(i) 5.7.21
max_allowed_packet=32M

Version checking using standard phpBB tools takes ~45 seconds and completes successfully.
If I check versions with your extension, it takes ~40 seconds before the database crashes.
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Re: MySQL server has gone away [2006]

by LukeWCS » Wed Jun 19, 2024 7:29 pm

Okay, thanks for the versions.

To be honest: I have absolutely no idea what could be wrong, as I have never seen this error message on any of my exts, and not on any other exts either. ;) But let's see if we can find something.

First a little test, as I want to find out something specific in order to perhaps narrow down the problem a little more:
  1. Change the setting "Set check boxes:" to "Remember last state".
  2. Set the checkboxes for all enabled and disabled extensions.
  3. Save the selection using the "Save" link in the link bar above the extensions list.
Does that work, or does the same SQL error appear?
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Re: MySQL server has gone away [2006]

by dimassamid » Wed Jun 19, 2024 9:54 pm

Yes. This operation is performed very quickly.

I experimented on a test board. If I reduce the amount of extensions to at least 100, the waiting time decreases and everything works fine.

I contacted my hosting provider. They told me that for security reasons, MySQL servers have a timeout limit of 30 seconds.
wait_timeout = 30
Could this be the cause of the problem?

This value is global and cannot be changed. They recommend increasing the wait_timeout for the session using the site code.
SET SESSION wait_timeout = 600
dimassamid
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Re: MySQL server has gone away [2006]

by LukeWCS » Thu Jun 20, 2024 5:19 pm

dimassamid wrote: Yes. This operation is performed very quickly.
So the functions that play a role here aren't the problem at all. That's what I assumed, but I had to be sure.
wait_timeout = 30
Could this be the cause of the problem?
Not for EMP, because it doesn't have any function that would take so long to access the DB. But EMP isn't the only Ext that's running.

Okay, next test:

Since you have 2.0.1, edit the file ext\lukewcs\extmgrplus\core\ext_mgr_plus.php

Change line 194 to this:

Code: Select all

			// $this->versioncheck_save();
Then test the version check again.
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Re: MySQL server has gone away [2006]

by dimassamid » Thu Jun 20, 2024 11:58 pm

I commented out this line and got a similar error.

Code: Select all

SQL ERROR [ mysqli ]

MySQL server has gone away [2006]

SQL

SELECT migration_name FROM phpbb_migrations WHERE migration_name LIKE '%\\\\migrations\\\\%'

BACKTRACE

FILE: (not given by php)
LINE: (not given by php)
CALL: msg_handler()

FILE: [ROOT]/phpbb/db/driver/driver.php
LINE: 1031
CALL: trigger_error()

FILE: [ROOT]/phpbb/db/driver/mysqli.php
LINE: 211
CALL: phpbb\db\driver\driver->sql_error()

FILE: [ROOT]/phpbb/db/driver/factory.php
LINE: 353
CALL: phpbb\db\driver\mysqli->sql_query()

FILE: [ROOT]/ext/lukewcs/extmgrplus/core/ext_mgr_plus.php
LINE: 736
CALL: phpbb\db\driver\factory->sql_query()

FILE: [ROOT]/ext/lukewcs/extmgrplus/core/ext_mgr_plus.php
LINE: 670
CALL: lukewcs\extmgrplus\core\ext_mgr_plus->load_migrations_db()

FILE: [ROOT]/ext/lukewcs/extmgrplus/core/ext_mgr_plus.php
LINE: 237
CALL: lukewcs\extmgrplus\core\ext_mgr_plus->get_exts_with_new_migration()

FILE: [ROOT]/ext/lukewcs/extmgrplus/event/listener.php
LINE: 49
CALL: lukewcs\extmgrplus\core\ext_mgr_plus->ext_manager_after()

FILE: (not given by php)
LINE: (not given by php)
CALL: lukewcs\extmgrplus\event\listener->ext_manager_after()

FILE: [ROOT]/vendor/symfony/event-dispatcher/EventDispatcher.php
LINE: 214
CALL: call_user_func()

FILE: [ROOT]/vendor/symfony/event-dispatcher/EventDispatcher.php
LINE: 44
CALL: Symfony\Component\EventDispatcher\EventDispatcher->doDispatch()

FILE: [ROOT]/phpbb/event/dispatcher.php
LINE: 62
CALL: Symfony\Component\EventDispatcher\EventDispatcher->dispatch()

FILE: [ROOT]/phpbb/event/dispatcher.php
LINE: 46
CALL: phpbb\event\dispatcher->dispatch()

FILE: [ROOT]/includes/acp/acp_extensions.php
LINE: 387
CALL: phpbb\event\dispatcher->trigger_event()

FILE: [ROOT]/includes/functions_module.php
LINE: 676
CALL: acp_extensions->main()

FILE: [ROOT]/adm/index.php
LINE: 81
CALL: p_master->load_active()
I installed a clean forum for experimentation. I can send you access in a private message.
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Re: MySQL server has gone away [2006]

by LukeWCS » Fri Jun 21, 2024 12:20 pm

Thank you for the test login. I won't get to that until the weekend though. But let's see if we can get any more information beforehand.

Interesting. The problem obviously occurs when a function is used after the version check that accesses the DB (read). It doesn't matter which one. And I can see exactly from both error messages that the error doesn't occur in the EMP code at all, but in functions that are executed by phpBB itself.

Next try: deactivate all exts except for EMP and try again. Does it work then? Oh and before the test please undo the change in ext_mgr_plus.php.
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Re: MySQL server has gone away [2006]

by dimassamid » Sat Jun 22, 2024 10:13 am

On the test forum all extensions are disabled. The error is the same.

There may be some problem with the server configuration. However, I need to know what exactly is wrong so that I can contact the hosting provider.
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Re: MySQL server has gone away [2006]

by LukeWCS » Sat Jun 22, 2024 3:31 pm

Okay, then we can assume that other exts are not involved in the problem.

I'm stuck at this point, I really have no idea what could be causing this error. Please contact your host and send the first error message in full and ask your host whether the reason for this error has been logged somewhere.
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Re: MySQL server has gone away [2006]

by dimassamid » Sun Jun 23, 2024 3:41 pm

In the web server logs I found entries like this:

Code: Select all

mysite.com *.*.*.* - - [23/Jun/2024:17:59:38 +0300] "GET /adm/index.php?i=acp_extensions&sid=9524de2cbb56ed14ab2ec908cfb6f80b&mode=main&action=list&versioncheck_force=1 HTTP/1.1" 503 4671 "http://mysite.com/adm/index.php?sid=9524de2cbb56ed14ab2ec908cfb6f80b&i=acp_extensions&mode=main" "Mozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/126.0.0.0 Safari/537.36" 41099253 212159:197337
The request is returned with error 503

It seems to me that the request does not have time to complete and the web server aborts the process due to a timeout. It would be great if the version checking process could be divided into several parts, as is the case with search indexing of messages. But this is a question for the engine developers... I understand that your extension only complements the basic functionality of phpBB.
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Re: MySQL server has gone away [2006]

by LukeWCS » Mon Aug 19, 2024 1:57 pm

dimassamid wrote: It would be great if the version checking process could be divided into several parts, as is the case with search indexing of messages. But this is a question for the engine developers...
Yes, that would be desirable, since it was always only a matter of time before administrators installed so many extensions that there could be problems with timeouts during a version check.
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Re: MySQL server has gone away [2006]

by LukeWCS » Thu Aug 22, 2024 3:04 pm

dimassamid wrote: but the database does not crash if I do it using the default phpBB tool.
I now have a suspicion based on your feedback. And I may also have a workaround. Please test it and replace the EMP core file with this version. I definitely need your feedback here, as I cannot simulate your case, at least I don't know how.

edit: Attachment removed, no longer relevant.
Last edited by LukeWCS on Sat Sep 07, 2024 6:22 pm
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Re: MySQL server has gone away [2006]

by dimassamid » Sun Aug 25, 2024 12:08 pm

Hello,

I tested the new version and it works! :D

Just one thing. There is a ⚠️warning icon next to the version number. It disappears if I click on "Details". I don't remember if this was earlier. As far as I understand, if the version is checked successfully (regardless of whether it is outdated or not), this warning should not be there. But I have these warnings everywhere.
Attachments
versions.png
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dimassamid
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Re: MySQL server has gone away [2006]

by LukeWCS » Sun Aug 25, 2024 1:00 pm

dimassamid wrote: I tested the new version and it works! :D
OK, that's the result I was hoping for. :)
Just one thing. There is a ⚠️warning icon next to the version number. It disappears if I click on "Details".
Yes, that's also what I expected and it fits exactly with my suspicion: phpBB can no longer determine these versions because phpBB has exactly the same problem with the SQL timeout as EMP 2.0.1. I assume these errors are with the extensions at the end of the list?

You only notice this when you use EMP because the errors are displayed afterwards, but not with phpBB Vanilla. That's why it looks like the version check is working completely with phpBB Vanilla. But that's not the case.

And exactly this method with "Details" is now your workaround that you can use, because EMP also saves the version data in the DB with the "Details" function if it has changed.

edit:

Forgotten:
dimassamid wrote:As far as I understand, if the version is checked successfully (regardless of whether it is outdated or not), this warning should not be there.
Exactly. This yellow warning triangle always appears when there were errors during the version check. All icons in EMP have a tooltip: simply move the mouse cursor over an icon to get the tooltip.
But I have these warnings everywhere.
Yes, because phpBB itself could no longer check these versions because the SQL timeout already prevented the version check from being fully executed. This is a phpBB problem, not an EMP problem.

My 2.0.2 workaround only prevents EMP from being blocked by the SQL timeout. But the SQL timeout is already hindering phpBB itself, the only difference is that this SQL error is suppressed by phpBB Vanilla.
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